Publications
Bonnet E, Viara E, Kuperstein I, Calzone L, Cohen D, Barillot E and Zinovyev A
NaviCell Web
Service for network-based data visualization Nucleic Acids Research (2015)
doi: 10.1093/nar/gkv450
Kuperstein I, Cohen DPA, Pook
S, Viara E, Calzone L, Barillot E and Zinovyev A
NaviCell: a
web-based environment for navigation, curation and maintenance of
large molecular interaction maps. doi:10.1186/1752-0509-7-100
Calzone L, Gelay A, Zinovyev
A, Radvanyi F, Barillot E
A comprehensive modular map of
molecular interactions in RB/E2F pathway.
Mol Syst Biol
(2008) 4: 173. PMID:18319725
Zinovyev A, Viara E, Calzone L,
Barillot E
BiNoM: a Cytoscape plugin for manipulating and
analyzing biological networks.
Bioinformatics. 2008 24(6):87.
PMID:18024474
Pook S, Vaysseix G, Barillot E
Zomit:biological data visualization and
browsing.
Bioinformatics. 1998 4:807. PMID:9918951
Publications using NaviCell
Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse AM, Garin J, Malissen B, Daeron M, Thieffry D.
Computational modeling of the main signaling pathways involved in mast cell activation.
Curr Top Microbiol Immunol. 2014;382:69-93.
PMID:25116096.
Chanrion M, Kuperstein I,
Barrière C, El Marjou F, Cohen D, Vignjevic D, Stimmer L,
Paul-Gilloteaux P, Bièche I, Dos Reis Tavares S, Boccia GF,
Cacheux W, Meseure D, Fre S, Martignetti L, Legoix-Né P,
Girard E, Fetler L, Barillot E, Louvard D, Zinovyev A, Robine S
Concomitant Notch activation and p53 deletion trigger
epithelial-to-mesenchymal transition and metastasis in mouse
gut.
Nature Communications. 2014 Oct 8;5:5005. doi:
10.1038/ncomms6005 PMID: 25295490
Kuperstein I, Grieco L, Cohen D, Thieffry D, Zinovyev A, Barillot E. The shortest path is not the one you know: application of biological network resources in precision oncology research. Mutagenesis, 2015 Mar;30(2):191-204. doi: 10.1093/mutage/geu078. PMID: 25688112
Cohen D, Kuperstein I, Barillot E, Zinovyev A, Calzone L. From a biological hypothesis to the construction of a mathematical model. Methods Mol Biol. 2013;1021:107-25. doi: 10.1007/978-1-62703-450-0_6. PMID: 23715982.
Calzone L, Kuperstein I, Cohen D, Grieco L, Bonnet E, Servant N, Hupé P, Zinovyev A, Barillot E. Biological network modelling and precision medicine in oncology. Bull Cancer. 2014 Jun;101 Suppl 1:S18-21. doi: 10.1684/bdc.2014.1973. PMID: 24966078